chr6:151666222:G>T Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:151,987,357-151,987,357 View the variant detail on this assembly version. |
| hg38 | chr6:151,666,222-151,666,222 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.367 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.080 | breast carcinoma | We also identified two variants (rs3734805 and rs9383938) mapping to 6q25.1 estr... | BeFree | 21263130 | Detail |
| 0.240 | Malignant neoplasm of breast | We also identified two variants (rs3734805 and rs9383938) mapping to 6q25.1 estr... | BeFree | 21263130 | Detail |
| 0.002 | breast carcinoma | Two variants, 6q25.1-rs9383938 and TXNRD2-rs8141691, were statistically signific... | BeFree | 25002657 | Detail |
| 0.009 | Malignant neoplasm of breast | Two variants, 6q25.1-rs9383938 and TXNRD2-rs8141691, were statistically signific... | BeFree | 25002657 | Detail |
| <0.001 | Mammographic Density | Two variants, 6q25.1-rs9383938 and TXNRD2-rs8141691, were statistically signific... | BeFree | 25002657 | Detail |
| <0.001 | Carcinoma of male breast | Five SNPs showed a statistically significant association with male breast cancer... | BeFree | 21949660 | Detail |
| <0.001 | Malignant neoplasm of male breast | Five SNPs showed a statistically significant association with male breast cancer... | BeFree | 21949660 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| We also identified two variants (rs3734805 and rs9383938) mapping to 6q25.1 estrogen receptor 1 (ESR... | DisGeNET | Detail |
| We also identified two variants (rs3734805 and rs9383938) mapping to 6q25.1 estrogen receptor 1 (ESR... | DisGeNET | Detail |
| Two variants, 6q25.1-rs9383938 and TXNRD2-rs8141691, were statistically significantly associated wit... | DisGeNET | Detail |
| Two variants, 6q25.1-rs9383938 and TXNRD2-rs8141691, were statistically significantly associated wit... | DisGeNET | Detail |
| Two variants, 6q25.1-rs9383938 and TXNRD2-rs8141691, were statistically significantly associated wit... | DisGeNET | Detail |
| Five SNPs showed a statistically significant association with male breast cancer: rs13387042 (2q35) ... | DisGeNET | Detail |
| Five SNPs showed a statistically significant association with male breast cancer: rs13387042 (2q35) ... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs9383938 dbSNP
- Genome
- hg38
- Position
- chr6:151,666,222-151,666,222
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs9383938
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.3668
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 6148
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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